Analysis(24) •
Analysis,(1) •
Goals(2) •
Processing(55) •
Processing,(19) •
Proessing,(1) •
Protcols(1) •
Protocls(1) •
Protocol(2) •
Protocols(41) •
Protocols,(7)
Analysis 24
- 20201221 BUSCO on P. astreoides transcriptome assembly • December 21, 2020
- 20210104 BUSCO on P. astreoides transcriptome assembly • January 4, 2021
- 20240122 Gfas single cell fresh vs frozen analysis • January 22, 2024
- BUSCO on Pastreoides reference transcriptomes • September 30, 2021
- BisSNP Analysis • August 4, 2023
- CellRanger on Ehrens scRNAseq data • April 24, 2024
- EpiDiverse SNP Analysis • March 15, 2023
- Epidiverse WBGS testing • August 21, 2023
- Genome Annotation on Galaxea fasicularis • September 11, 2023
- Gfas Dark Genes Single cell preliminary analysis • September 5, 2023
- Gfas_Syms_CellRanger_Analysis • January 31, 2024
- HIAST2 alignment with Mansour transcriptome • October 22, 2021
- KOFamScan for P. astreoides • August 7, 2023
- KofamScan Workflow • March 23, 2023
- Methylseq trimming test to remove m-bias • November 16, 2021
- NF-CORE Methylseq Thermal Transplant • October 21, 2021
- Old Tag-seq analysis for PJB • April 27, 2022
- PJB ITS2 Re-seq Analysis • August 12, 2022
- Porites astreoides genome annotation • April 25, 2022
- Testing BS-SNPer on WGBS data • November 21, 2022
- Testing CellRanger mitochondrial genome integration approaches for scRNAseq data • March 27, 2024
- Training AUGUSTUS with BUSCO • October 21, 2021
- Troubleshooting OrthoFinder • December 5, 2023
- Troubleshooting WGBS Scripts • October 18, 2022
Analysis, 1
- Past genome MAKER rnd 1 troubleshooting • August 19, 2021
Goals 2
- February Goals • February 13, 2018
- November Goals • November 9, 2017
Processing 55
- 20201006 Adult P.astreoides Metabolomic Extractions • October 6, 2020
- 20201008 Adult P.astreoides Metabolomic Extractions • October 8, 2020
- 20201009 Adult P.astreoides Metabolomic Extractions • October 12, 2020
- 20201013 Adult P.astreoides Metabolomic Extractions • October 13, 2020
- 20201015 Adult P.astreoides Metabolomic Extractions • October 15, 2020
- 20201020 Adult P.astreoides and AH test sample Metabolomic Extractions • October 20, 2020
- 20201022 DNA RNA Extractions Porites July Bleaching Experiment • October 23, 2020
- 20201027 DNA RNA Extractions Porites July Bleaching Experiment • October 27, 2020
- 20201029 DNA RNA Extractions Porites July Bleaching Experiment and WGBS samples • October 29, 2020
- 20201106 DNA RNA Extractions Porites July Bleaching Experiment and WGBS samples • November 6, 2020
- 20201110 DNA RNA Extractions Porites July Bleaching Experiment • November 10, 2020
- 20201111 DNA RNA Extractions Porites July Bleaching Experiment • November 11, 2020
- 20201117 DNA RNA Extractions Porites July Bleaching Experiment • November 17, 2020
- 20201119 DNA RNA Extractions Porites July Bleaching Experiment • November 19, 2020
- 20201120 DNA RNA Extractions Porites July Bleaching Experiment • November 20, 2020
- 20201126 DNA RNA Extractions Porites July Bleaching Experiment • November 26, 2020
- 20201202 DNA RNA Extractions Porites July Bleaching Experiment • December 3, 2020
- 20210121 Nanodrop results on Tag-Seq samples • January 21, 2021
- 20210302 Thermal Transplant ITS2 • March 4, 2021
- 20210309 Thermal Transplant ITS2 • March 10, 2021
- 20210321 Symbiont Integration Metabolomics Extractions BATCH 1 • March 22, 2021
- 20210325 Symbiont Integration Metabolomics Extractions BATCH 2 • March 25, 2021
- 20210325 Thermal Transplant ITS2 • March 25, 2021
- 20210422 WGBS PicoMethyl-seq library prep for Thermal Transplant Trial 3 • April 23, 2021
- 20210426 WGBS PicoMethyl-seq library prep for Thermal Transplant Trial 4 • April 27, 2021
- 20210428 WGBS PicoMethyl-seq library prep for Thermal Transplant Trial 5 • April 29, 2021
- 20210504 WGBS PicoMethyl-seq library prep for Thermal Transplant Trial 6 • May 4, 2021
- 20210506 WGBS PicoMethyl-seq library prep for Thermal Transplant Trial 7 • May 6, 2021
- 20210512 WGBS PicoMethyl-seq library prep for Thermal Transplant Trial 8 • May 12, 2021
- 20210526 WGBS PicoMethyl-seq library re-amplification 2 • May 26, 2021
- 20210712 AH Tag-seq Plate Prep • July 12, 2021
- 20211104 ITS2 Test set for KW-AH-ES samples • November 4, 2021
- 20220319 PJB ITS2 re-seq • March 21, 2022
- Astrangia Nutrition DNA Extractions • April 18, 2019
- Citrate Synthase Troubleshooting • March 14, 2019
- Citrate Synthase for A. poculata nutrition experiment • April 28, 2019
- DNA Extractions for adult homogenates of Porites Thermal Transplant Batch 2 • August 7, 2020
- DNA Extractions for adult homogenates of Porites Thermal Transplant Batch 3 • August 12, 2020
- DNA Extractions for adult homogenates of Porites Thermal Transplant Batch 4 • August 13, 2020
- DNA Extractions for adult homogenates of Porites Thermal Transplant Batch 5 • August 14, 2020
- DNA Extractions for adult homogenates of Porites Thermal Transplant Batch 6 • August 19, 2020
- DNA Extractions for adult homogenates of Porites Thermal Transplant Batch 7 • August 21, 2020
- DNA Extractions for adult homogenates of Porites Thermal Transplant Batch 8 • February 8, 2021
- DNA RNA Extractions on P. astreoides larvae - BEAD BEATING Batch 2 • August 13, 2020
- DNA RNA Extractions on P. astreoides larvae - BEAD BEATING Batch 3 • August 14, 2020
- DNA RNA Extractions on P. astreoides larvae - BEAD BEATING Batch 4 • August 19, 2020
- DNA RNA Extractions on P. astreoides larvae - BEAD BEATING Batch 5 • August 20, 2020
- Galaxea Airbrush, cell count, and RNA extraction test • November 29, 2022
- Galaxea Bleaching Trials • March 21, 2023
- ITS2 KW-AH-ES samples • November 9, 2021
- Past genome MAKER rnd 1 troubleshooting • August 19, 2021
- SAM ELISA Kit for A. poculata nutrition experiment • May 15, 2019
- Symbiont Integration Metabolomics Processing (20210321 - 20210414) • April 16, 2021
- Thermal Transplant ITS2 Test • February 18, 2021
- Zymo Quick-DNA Mini Prep Kit Troubleshooting on Adult P. astreoides • March 3, 2019
Processing, 19
- 20201203 Tag-Seq prep for Porites July Bleaching Experiment • December 3, 2020
- 20210401 WGBS PicoMethyl-seq library prep for Thermal Transplant Trial 1 • April 1, 2021
- 20210415 WGBS PicoMethyl-seq library prep for Thermal Transplant Trial 2 • April 15, 2021
- 20210510 WGBS PicoMethyl-seq library re-amplification • May 10, 2021
- Adult coral Homogenate prep and symbiont separation • April 24, 2019
- Airbrushing and Homogenizing Porites June Patch Adult Tissues • October 4, 2019
- DNA Extractions for adult homogenates of Porites Thermal Transplant • August 6, 2020
- DNA RNA Extractions Thermal Transplant ADULT AND LARVAE Trial 4 • January 13, 2020
- DNA RNA Extractions Thermal Transplant Porites Trial 1 • December 3, 2019
- DNA RNA Extractions Thermal Transplant Porites Trial 2 • December 4, 2019
- DNA RNA Extractions Thermal Transplant Porites Trial 2 • December 4, 2019
- DNA RNA Extractions Thermal Transplant Porites Trial 3 • December 5, 2019
- DNA-RNA Extractions Porites astreoides homogenates, larvae, and adult fragments • August 5, 2020
- DNA-RNA extractions Porites Thermal Transplant Larvae BATCH 1 • August 6, 2020
- DNA-RNA-Extractions-Thermal-Transplant-Porites-and-Geoduck • July 30, 2020
- DNA-RNA-Extraxtion-Thermal-Transplant-Porites-Homogenates • July 31, 2020
- Genome Annotation on Galaxea fasicularis • September 11, 2023
- Total Antioxidant Capacity Porites June Patch Adult tissues • October 4, 2019
- Zymo-DNA-RNA-Extract-P.astreoides-Genome • March 13, 2019
Proessing, 1
- DNA RNA Extractions Thermal Transplant Porites LARVAE Trial 1 • December 5, 2019
Protcols 1
- 20201125 DNA RNA Extractions Porites July Bleaching Experiment • November 25, 2020
Protocls 1
- Transcriptomics Central Document • March 27, 2024
Protocol 2
- Direct RNA sequencing on Oxford Nanopore MinION Protocol • October 24, 2023
- Metabolomics Central Document • March 27, 2024
Protocols 41
- 16S Central Document • March 27, 2024
- 20201025 DNA RNA Extractions Porites July Bleaching Experiment • October 26, 2020
- 20201203 Tag-Seq prep for Porites July Bleaching Experiment • December 3, 2020
- 20210401 WGBS PicoMethyl-seq library prep for Thermal Transplant Trial 1 • April 1, 2021
- 20210415 WGBS PicoMethyl-seq library prep for Thermal Transplant Trial 2 • April 15, 2021
- 20210510 WGBS PicoMethyl-seq library re-amplification • May 10, 2021
- 20210622 Lipid Assay Trial • June 23, 2021
- 20210624 Lipid Assay Trial • June 25, 2021
- 20210629 Total Protein Testing • June 30, 2021
- 20210713 Carbohydrate Assay Test • July 14, 2021
- 20210826 Lipid Extraction Species Test • August 26, 2021
- Adult coral Homogenate prep and symbiont separation • April 24, 2019
- Airbrushing Protocol for Porites July Bleaching Project • June 11, 2021
- Airbrushing and Homogenizing Porites June Patch Adult Tissues • October 4, 2019
- Coral Nuclei Isolation Tests • November 8, 2022
- Coral processing for TEM imaging • January 30, 2023
- DNA Extractions for adult homogenates of Porites Thermal Transplant • August 6, 2020
- DNA Methylation Central Document • March 27, 2024
- DNA RNA Extractions Thermal Transplant ADULT AND LARVAE Trial 4 • January 13, 2020
- DNA RNA Extractions Thermal Transplant Porites LARVAE Trial 1 • December 5, 2019
- DNA RNA Extractions Thermal Transplant Porites Trial 1 • December 3, 2019
- DNA RNA Extractions Thermal Transplant Porites Trial 2 • December 4, 2019
- DNA RNA Extractions Thermal Transplant Porites Trial 2 • December 4, 2019
- DNA RNA Extractions Thermal Transplant Porites Trial 3 • December 5, 2019
- DNA RNA Extractions on P. astreoides larvae - BEAD BEATING • August 12, 2020
- DNA-RNA Extractions Porites astreoides homogenates, larvae, and adult fragments • August 5, 2020
- DNA-RNA extractions Porites Thermal Transplant Larvae BATCH 1 • August 6, 2020
- DNA-RNA-Extractions-Thermal-Transplant-Porites-and-Geoduck • July 30, 2020
- DNA-RNA-Extraxtion-Thermal-Transplant-Porites-Homogenates • July 31, 2020
- Galaxea fascicularis welcome party to the Cnimmunity lab • November 15, 2022
- Genome Annotation Central Document • March 27, 2024
- ITS2 Central Document • March 27, 2024
- Lab Notebook Generation • October 16, 2017
- Metabolomics P astreoides sample prep • February 3, 2020
- Single-cell RNAseq Central Document • March 27, 2024
- Symbiodinium Density Analysis Protocol • August 16, 2018
- Thermal Transplant WGBS PicoMethyl Protocol • April 16, 2021
- Total Antioxidant Capacity Porites June Patch Adult tissues • October 4, 2019
- Total Protein Extraction Protocol • October 5, 2018
- Touchdown PCR for ITS2 • March 16, 2022
- Zymo-DNA-RNA-Extract-P.astreoides-Genome • March 13, 2019
Protocols, 7
- 20201022 DNA RNA Extractions Porites July Bleaching Experiment • October 23, 2020
- 20201027 DNA RNA Extractions Porites July Bleaching Experiment • October 27, 2020
- Citrate Synthase Troubleshooting • March 14, 2019
- SAM ELISA Kit for A. poculata nutrition experiment • May 15, 2019
- Symbiont Integration Metabolomics Processing (20210321 - 20210414) • April 16, 2021
- Thermal Transplant ITS2 Test • February 18, 2021
- Zymo Quick-DNA Mini Prep Kit Troubleshooting on Adult P. astreoides • March 3, 2019